2009 Fall Publications from the Department of Ecology and Evolution

• Brook, B.W., H.R. Akçakaya, D.A. Keith, G.M. Mace, R.G. Pearson, and M.B. Araujo. 2009. Integrating bioclimate with population models to improve forecasts of species extinctions under climate change. Biology Letters 5:723-725.
• Adrian, Rita, Catherine M. O’Reilly, Horacio Zagarese, Stephen B. Baines, Dag O. Hessen, Wendel Keller, David M. Livingstone, Ruben Sommaruga, Dietmar Straile, Ellen Van Donk, Gesa A. Weyhenmeyer, and Monika Winder. 2009. Lakes as sentinels of climate change. Limnology and Oceanography 54(6, part 2): 2283-2297.
• Edwin H. Battley 2009. Is electron equivalence between substrate and product preferable to C-mol equivalence in representations of microbial anabolism applicable to "origin of life" environmental conditions?. Journal of Theoretical Biology, 260 (2009) 267-275, doi:10.1016/j.jtbi.2009.05.032.
• Arif, S., W. E. Aguirre, and M. A. Bell. 2009. Evolutionary diversification of operculum shape in Cook Inlet threespine stickleback. Biol. J. Linn. Soc. 97:832-844.
• Bell, M. A., J. D. Stewart and P. J. Park. 2009. The world's oldest fossil threespine stickleback. Copeia 2009:256-265.
• Bell, M. A. 2009. I. 17. Microevolution. In: S. A. Levin (ed.). The Princeton Guide to Ecology, pp. 126-133, Princeton University Press, Princeton.
• Bell, M. A. 2009. Implications of fossil threespine stickleback for Darwinian gradualism. Journal of Fish Biology. (in press).
• Shapiro, M. D., B. R. Summers, S. Baldhadra, J. T. Aldenoven, A. L. Miller, C. B. Cunningham, M. A. Bell, and D. M. Kingsley. 2009. The genetic architecture of skeletal convergence and sex determination in ninespine sticklebacks. Current Biology 19:1-6.
• Nomakuchi, S., P. J. Park, and M. A. Bell. 2009. Correlation between exploration activity and use of social information in threespine sticklebacks. Behavioral Ecology. 20:340-345.
• Rodrigo Cogni. Resistance to Plant Invasion? A Native Specialist Herbivore Shows Preference for and Higher Fitness on an Introduced Host. BIOTROPICA DOI: 10.1111/j.1744-7429.2009.00570.x.
• Chattopadhyay, S., S. J. Weissman, V. N. Minin, T. A. Russo, D. E. Dykhuizen, E. V. Sokurenko. 2009. High Frequency of Hotspot Mutations in Core Genes of Escherichia coli due to Short-Term Positive Selection. Proc. Natl. Acad. Sci. USA 106:12412-12417.
• Chattopadhyay, S., R. N. Paranjpye, D. E. Dykhuizen, E. V. Sokurenko, M. S. Strom. 2009. Comparative evolutionary analysis of the major structural subunit of Vibrio vulnificus type IV pili. Mol. Bio. Evol. 26:2185-2196.
• Dykhuizen, D. E., A. M. Dean. 2009. Experimental Evolution from the bottom up. In (T. Garland Jr, M. R. Rose, eds.) Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments. University of California Press. Pp.67-87.
• Dykhuizen, D. E., and I. N. Wang. 2009. Animal foraging meets viruses. Evol. Ecol. Res.
• Dávalos LM, Porzecanski AL. 2009. Accounting for molecular stochasticity in systematic revisions: species limits and phylogeny of Paroaria. Molecular Phylogenetics and Evolution. Oct;53(1):234-48. Epub 2009 Jun 11.
• Dávalos LM, Bejarano AC, Correa HL. 2009. Disabusing cocaine: pervasive myths and enduring realities of a globalised commodity. International Journal of Drug Policy. Sep;20(5):381-6. Epub 2008 Dec 2.
• Dávalos, L.M. 2009. Earth history and the evolution of Caribbean bats. Island bats: ecology, evolution, and conservation. Fleming, T.H., and P.A. Racey (eds.). Chicago: University of Chicago Press.
• Futuyma, D. J. 2009. Evolution, second edition. Sinauer, Sunderland, Mass.
• Futuyma, D. J., and A. A. Agrawal. 2009. Evolutionary history and species interactions. Proc. Nat. Acad. Sci. USA 106:18043-18044.
• Futuyma, D. J., and A. A. Agrawal. 2009. Macroevolution and the biological diversity of plants and herbivores. Proc. Nat. Acad. Sci. 106:18054-18061.
• Futuyma, D. J., and A. F. Bennett. 2009. The importance of experimental studies in evolutionary biology. Pp. 15-30 in T. Garland, Jr., and M. R. Rose (eds.), Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments. University of California Press, Berkeley.
• Futuyma, D.J., and R.K. Colwell. 2009. Lawrence B. Slobodkin (1928-2009): Integrating theory, models, and experiments in ecology. PLoS Biology. 7(12):1-2 (e1000261).
• Rodrigo Cogni & Douglas J. Futuyma. Local adaptation in a plant herbivore interaction depends on the spatial scale. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY 97(3):494-502.
• Burger, O. and Ginzburg, L.R. 2009. Of size and extinction: A random walk model predicts the body size of lowest risk for mammals. Evolutionary Ecology Research. Evolutionary Ecology Research. 11:1017-1029.
• Ginzburg, L.R., Burger, O., and Damuth, J., 2009. The May threshold and life history allometry. Ecology Letters (submitted).
• Burger, O. and Ginzburg, L.R. 2009. Of size and extinction: A random walk model predicts the body size of lowest risk for mammals. Evolutionary Ecology Research. 11:1017-1029.
• Elith, J. and C.H. Graham. 2009. Do they / How do they / WHY do they differ? -- on finding reasons for differing performances of species distribution models. Ecography, 32:66-77. (Invited opinion paper).
• Freile, F.J., J.L. Parra and C.H. Graham. Distribution and conservation of Grallaria and Grallaricula antpittas (Formicariidae) in Ecuador. Bird Conservation International (in press).
• Graham, C.H., J.L. Parra, C. Rahbek, J. A. McGuire. 2009. Phylogenetic structure in tropical hummingbird communities. Proceedings of the National Academy of Sciences (in press).
• Graham, C.H., B.A. Loiselle, J. Velasquez* and F. Cuesta. Species distribution modelling and the challenge of predicting future distributions. In. Forecasting how climate change will influence biological diversity. Invited chapter for SCOPE book (in press).
• Graham, C.H. and S. Goetz. 2009. GIS and remote sensing. In Simon A. Levin (Ed.). The Princeton Guide to Ecology. Princeton University Press.
• Hickerson, MJ., B.C. Carstens, C. Cavender-Bares, K. Crandall, C. H. Graham, J. Johnson, L. Rissler, P.F. Victoriano, and B. Yoder. 20 years after Avise et al. 1987: Comparative phylogeography fulfilling original promise by integrating with emerging fields. Molecular Evolution and Phylogenetics (in press).
• Moritz, C., C. Hoskin, J. MacKenzie, B. L. Phillips, M. Tonione, N. Silva, J. VanDerWal, S. E. Williams, and C.H. Graham. 2009. Identification and dynamics of a cryptic suture zone in tropical rainforest. Proceedings of the Royal Society, 276:1235-1244.
• Phillips, S., J. Elith, M. Dudik*, C.H. Graham, A. Lehmann, J. Leathwick and S. Ferrier. 2009. Sample selection bias and presence-only models of species distributions: implications for selection of background and pseudo-absences. Ecological Applications, 19:181-197.
• Thomassen, H.A., W. Buermann, B. Mila, C.H. Graham, S.E. Cameron, C.J. Schneider, J.P. Pollinger, S. Saatchi, R.K Wayne, T.B. Smith. Modeling environmentally associated morphological and genetic variation in a rainforest bird, and its application to conservation prioritization. Evolutionary Applications (in press).
• Tinoco, B.A., P.X. Astudillo, S.C. Latta and C.H. Graham. 2009. Distribution, ecology and conservation of an endangered Andean hummingbird: the violet-throated metaltail (Metallura baroni). Bird Conservation International, 19:1-14.
• VanDerWal, J., L.P. Shoo, C.H. Graham and S.E. Williams. 2009. Selecting pseudo-absence data for presence-only distribution modeling: how far should you stray from what you know? Ecological Modeling 220:589-594.
• Williams, S.E., J.L. Isaac, C.H. Graham and C. Moritz. Towards an understanding of vertebrate biodiversity in the Astralian Wet Tropics. In N. Stork and S. Turton (Eds.). Living in a dynamic tropical forest landscape. Blackwell Publishing (in press).
• Dukes, J.S., J. Pontius, D. Orwig, J.R. Garnas, V.L. Rodgers, N.Brazee, B. Cooke, KA. Theoharides, E.E. Stange, R. Harrington, J. Ehrenfeld, J. Gurevitch, M. Lerdau, K. Stinson, R. Wick, and M. Ayres. 2009. Responses of insect pests, pathogens, and invasive plant species to climate change in the forests of northeastern North America: What can we predict? Can. J. For. Res. 39:231-248.
• Gurevitch, J. and K. Mengersen. 2009. A statistical view of research synthesis of patterns of species richness along productivity gradients: devils, forests and trees. Ecology (in press).
• Gurevitch, J. 2009. Invasions and plant competition. In: Encyclopedia of Invasive Introduced Species. D. Simberloff and M. Rejmanek, eds. University of California Press, Berkeley CA. (in press).
• Lachance J. 2009. Detecting selection-induced departures from Hardy-Weinberg proportions. Genetics Selection Evolution 41:15.
• Lachance J. 2009. Inbreeding, pedigree size, and the most recent common ancestor of humanity. Journal of Theoretical Biology 261: 238-247.
• Lyons, P., C. Thornber, J. Portnoy, and E. Gwilliam. Dynamics of Macroalgal Blooms Along the Cape Cod National Seashore. Northeast Naturalist.
• Lyubov E. Burlakova, Alexander Y. Karatayev, Dianna K. Padilla, Leah D. Cartwright and David N. Hollas. 2009. Wetland restoration and invasive species: apple snail (Pomacea insularum) feeding on native and invasive aquatic plants. Restoration Ecology 17:433-440.
• Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2009. Dreissena polymorpha in Belarus: history of spread, population biology, and ecosystem impacts. In: The Zebra Mussels in Europe (G. van der Velde, S. Rajagopal and A. bij de Vaate, eds.).
• Alexander Y. Karatayev, Lyubov E. Burlakova, Dianna K. Padilla, Sergey E Mastitsky and Sergej Olenin. 2009. Invaders are not a random selection of species. Biological Invasions 11 SI:2009-2019.
• Kurt Schwenk, Dianna K. Padilla, George S. Bakken and Robert J. Full (shared first authorship). 2009. Grand challenges in organismal biology. Integrative and Comparative Biology. 49:7-14.
• Burbrink, F.T., and R.A. Pyron. 2009. How does ecological opportunity influence rates of speciation, extinction, and morphological diversification in New World ratsnakes (tribe Lampropeltini)? Evolution (in press).
• Pyron, R.A. 2009. A likelihood method for assessing molecular divergence time estimates and the placement of fossil calibrations. Systematic Biology (in press).
• Hsiao, H., M. Friess, B. Bradtmiller, and F. J. Rohlf. 2009. Development of sizing structure for fall arrest harness design. Ergonomics, 52:1128-1143.
• Moen, D. S., S. A. Smith, and J. J. Wiens. 2009. Community assembly through evolutionary diversification and dispersal in Middle American treefrogs. Evolution 63:3228-3247.